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biomcmc-lib
0.1
low level library for phylogenetic analysis
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biomcmc-lib
0.1
low level library for phylogenetic analysis
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| Calignment_struct | Data from alignment file |
| Carg_date | |
| Carg_dbl | |
| Carg_end | |
| Carg_file | |
| Carg_hdr | |
| Carg_int | |
| Carg_lit | |
| Carg_rem | |
| Carg_rex | |
| Carg_str | |
| Cbinary_parsimony_datamatrix_struct | Used by matrix representation with parsimony (01 10 11 sequences) |
| Cbinary_parsimony_struct | |
| Cbiomcmc_rng_struct | Random number structure (combined Tausworthe algorithm) |
| Cbip_hashitem_struct | Key (bipartition) and value (frequency) pair for hash table of bipartitions |
| Cbip_hashtable_struct | Hash table of bipartitions (see hashtable.h for original version, with string keys and integer values) |
| Cbipartition_struct | Bit-string representation of splits |
| Cbipsize_struct | |
| Cchar_vector_struct | Vector of strings (char vectors) of variable length |
| Ccharvec_str | |
| Cdiscrete_sample_struct | |
| Cdistance_generator_struct | |
| Cdistance_matrix_struct | |
| Cdsample_stack_struct | |
| Cedgearray_item | |
| Celement | |
| Cempfreq_double_element | |
| Cempfreq_double_struct | |
| Cempfreq_element | |
| Cempfreq_struct | |
| Cgenetree_struct | |
| Cgoptics_cluster_struct | |
| Chashtable_item_struct | Key/value pair for hash table |
| Chashtable_struct | Hash table (vector indexed by strings) |
| Chll_estimate_s | |
| Chll_s | |
| Chungarian_struct | |
| Ckmer_params_struct | |
| Ckmerhash_struct | |
| Clongoptions | |
| Cnewick_node_struct | Newick trees have minimal information, unlike topology_struct |
| Cnewick_space_struct | Collection of topologies from tree file. Each topology will have its own char_vector |
| Cnewick_tree_struct | |
| Cpoint | |
| CPriorityQueue | |
| Cprivhdr | |
| Creconciliation_struct | Mapping between gene tree nodes (this) and (external) species tree nodes |
| Crng_diaconis_struct | Persi Diaconis' lagged Fibonacci |
| Crng_gfsr4_struct | GFSR4 implementation from GSL |
| Crng_lfib4_struct | Marsaglia's LFIB4 lagged Fibonacci using addition |
| Crng_mt19937_struct | MT19937-64, the Mersenne Twister for 64 bits |
| Crng_mt19937ar_struct | MT19937, the original Mersenne Twister (for 32 bits); the name "ar" comes from "array" |
| Crng_swb_struct | Marsaglia's Subtract-with-borrow generator |
| Crng_taus_struct | |
| Crng_tt800_struct | Tt800 (small cousin of MT19937, the Mersenne Twister) |
| Crng_well1024_struct | |
| Crng_xorshift_struct | |
| Cspdist_matrix_struct | |
| Cspeciestree_struct | |
| Csplitset_struct | |
| CtagTRexNode | |
| Ctopol_node_struct | Information of a node (binary tree) |
| Ctopology_space_struct | Collection of topologies from tree file. When topologies have no branch lengths we store only unique topologies |
| Ctopology_struct | Binary unrooted topology (rooted at leaf with ID zero) |
| CTRex | |
| CTRexMatch |
1.8.13