biomcmc-lib  0.1
low level library for phylogenetic analysis
Data Fields
topology_space_struct Struct Reference

Collection of topologies from tree file. When topologies have no branch lengths we store only unique topologies. More...

#include <topology_space.h>

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Data Fields

int ntrees
 
int ndistinct
 
topologytree
 Number of trees originally in nexus file and compacted (only distinct topologies).
 
topologydistinct
 
double * freq
 Vector of trees originally in nexus file and compacted.
 
char_vector taxlabel
 frequency of each distinct topology (add up to one)
 
hashtable taxlabel_hash
 Taxon names.
 
bool is_rooted
 Lookup table with taxon names.
 
char * filename
 If trees are unrooted, then branch lengths must be accounted for in some comparisons.
 

Detailed Description

Collection of topologies from tree file. When topologies have no branch lengths we store only unique topologies.


The documentation for this struct was generated from the following file: