topology_space_struct Struct Reference

Collection of topologies from tree file. When topologies have no branch lengths we store only unique topologies. More...

#include <topology_space.h>

Collaboration diagram for topology_space_struct:

Data Fields
int	ntrees
int	ndistinct
topology *	tree
	Number of trees originally in nexus file and compacted (only distinct topologies).
topology *	distinct
double *	freq
	Vector of trees originally in nexus file and compacted.
char_vector	taxlabel
	frequency of each distinct topology (add up to one)
hashtable	taxlabel_hash
	Taxon names.
bool	is_rooted
	Lookup table with taxon names.
char *	filename
	If trees are unrooted, then branch lengths must be accounted for in some comparisons.

Detailed Description

Collection of topologies from tree file. When topologies have no branch lengths we store only unique topologies.

---

The documentation for this struct was generated from the following file:

• topology_space.h