biomcmclib
0.1
low level library for phylogenetic analysis

used by matrix representation with parsimony (01 10 11 sequences) More...
#include <parsimony.h>
Data Fields  
int  ntax 
int  nchar 
int  i 
number of taxa, distinct sites (patterns), and index to current (last) column  
bool **  s 
1 (01) and 2 (10) are the two binary states, with 3 (11) being undetermined  
int *  freq 
int  freq_sum 
frequency of pattern.  
int *  occupancy 
how many species represented by each bipartition  
uint32_t *  col_hash 
hash value of each column, to speed up comparisons  
int  ref_counter 
how many places have a pointer to this instance  
used by matrix representation with parsimony (01 10 11 sequences)