used by matrix representation with parsimony (01 10 11 sequences) More...

#include <parsimony.h>

Data Fields
int	ntax

int	nchar

int	i
	number of taxa, distinct sites (patterns), and index to current (last) column

bool **	s
	1 (01) and 2 (10) are the two binary states, with 3 (11) being undetermined

int *	freq

int	freq_sum
	frequency of pattern.

int *	occupancy
	how many species represented by each bipartition

uint32_t *	col_hash
	hash value of each column, to speed up comparisons

int	ref_counter
	how many places have a pointer to this instance

Detailed Description

used by matrix representation with parsimony (01 10 11 sequences)

The documentation for this struct was generated from the following file:

Data Fields