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    biomcmc-lib
    0.1
    
   low level library for phylogenetic analysis 
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Data Fields | |
| int ** | cost | 
| int | size | 
| cost matrix  | |
| int | initial_cost | 
| assignment size. Cost is a square matrix, so size should be an overestimate where "missing" nodes are added w/ cost zero  | |
| int | final_cost | 
| sum of lowest input cost values for each column. The hungarian method rescales them so that minimum per column is zero  | |
| int * | col_mate | 
| our final cost is on rescaled cost matrix, therefore to restore the "classical" optimal cost one should sum it with initial_cost  | |
| int * | unchosen_row | 
| int * | slack_row | 
| int * | row_mate | 
| int * | parent_row | 
| double ** | dcost | 
| col_mate[row] with column match for row  | |
| double | initial_dcost | 
| double | final_dcost | 
| double * | row_dec_d | 
| costs when working with float numbers instead of integers  | |
| double * | col_inc_d | 
| double * | slack_d | 
| int * | row_dec | 
| int * | col_inc | 
| int * | slack | 
| bool | is_double | 
 1.8.13