upgma.h File Reference

UPGMA and bioNJ from (onedimensional representation of) distance matrices. More...

#include "topology_randomise.h"

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Functions
void	upgma_from_distance_matrix (topology tree, distance_matrix dist, bool single_linkage)
	lowlevel UPGMA (or single-linkage) function that depends on a topology and a matrix_distance
void	bionj_from_distance_matrix (topology tree, distance_matrix dist)
	lowlevel bioNJ function (Gascuel and Cuong implementation) that depends on a topology and a matrix_distance

Detailed Description

UPGMA and bioNJ from (onedimensional representation of) distance matrices.