19 #ifndef _biomcmc_upgma_h_ 20 #define _biomcmc_upgma_h_ Creation of random topologies and modification of existing ones through branch swapping.
void upgma_from_distance_matrix(topology tree, distance_matrix dist, bool single_linkage)
lowlevel UPGMA (or single-linkage) function that depends on a topology and a matrix_distance ...
Definition: upgma.c:17
Definition: distance_matrix.h:29
void bionj_from_distance_matrix(topology tree, distance_matrix dist)
lowlevel bioNJ function (Gascuel and Cuong implementation) that depends on a topology and a matrix_di...
Definition: upgma.c:131
Binary unrooted topology (rooted at leaf with ID zero)
Definition: topology_common.h:47