newick_space.h File Reference

Reads a list of trees in newick format and creates vector of topologies. More...

#include "read_newick_trees.h"

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Data Structures
struct	newick_space_struct
	Collection of topologies from tree file. Each topology will have its own char_vector. More...

Typedefs
typedef struct newick_space_struct *	newick_space

Functions
newick_space	new_newick_space ()
void	del_newick_space (newick_space nwk)
topology	new_single_topology_from_newick_file (char *filename)
	Convenience function to read one newick tree from file, skipping checks (comments, multiline trees, etc.)
newick_space	new_newick_space_from_file (char *filename)
void	update_newick_space_from_file (newick_space nwk, char *filename)
void	update_newick_space_from_string (newick_space nwk, char *tree_string, size_t string_size)
void	update_newick_space_from_topology (newick_space nwk, topology topol)

Detailed Description

Reads a list of trees in newick format and creates vector of topologies.

Currently does not check for duplicated trees, or same leaf names on a tree