biomcmc library interface to external programs, specific to super_sptree repo. More...

#include "argtable3.h"
#include "kmerhash.h"
#include "parsimony.h"
#include "genetree.h"
#include "topology_space.h"
#include "clustering_goptics.h"
#include "quickselect_quantile.h"

Include dependency graph for biomcmc.h:

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Detailed Description

biomcmc library interface to external programs, specific to super_sptree repo.

The idea is for biomcmc-lib is to be general for several sofware, including treesignal and super_sptree. This library started branching from the biomcmc library from the guenomu software. It includes the edlib library for sequence pairwise edit distance (http://martinsos.github.io/edlib)